HL_8UIK_056

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8UIK|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_056 not in the Motif Atlas

Homologous match to HL_8CRE_048

Geometric discrepancy: 0.0632

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UIK|1|L5|U|3796
8UIK|1|L5|C|3797
8UIK|1|L5|U|3798
8UIK|1|L5|A|3799
8UIK|1|L5|A|3800
8UIK|1|L5|U|3801
8UIK|1|L5|U|3802
8UIK|1|L5|A|3803
8UIK|1|L5|G|3804

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA