HL_8UIK_069

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8UIK|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_069 not in the Motif Atlas

Homologous match to HL_8CRE_061

Geometric discrepancy: 0.0699

The information below is about HL_8CRE_061

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8UIK|1|L5|A|4474
8UIK|1|L5|G|4475
8UIK|1|L5|C|4476
8UIK|1|L5|A|4477
8UIK|1|L5|G|4478
8UIK|1|L5|A|4479
8UIK|1|L5|A|4480
8UIK|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40