HL_8UIK_090

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8UIK|1|S2|U|294

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_090 not in the Motif Atlas

Homologous match to HL_8CRE_196

Geometric discrepancy: 0.2638

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8UIK|1|S2|G|288
8UIK|1|S2|G|289
8UIK|1|S2|U|290
8UIK|1|S2|G|291
8UIK|1|S2|A|292
8UIK|1|S2|C|293
8UIK|1|S2|U|294
8UIK|1|S2|C|295

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11