HL_8UIW_002

3D structure

PDB id

8UIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N

Experimental method

X-RAY DIFFRACTION

Resolution

2.77 Å

Loop

Sequence

GUAGGUAGUC

Length

10 nucleotides

Bulged bases

8UIW|1|N|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_98864.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UIW|1|N|G|50
8UIW|1|N|U|51
8UIW|1|N|A|52
8UIW|1|N|G|53
8UIW|1|N|G|54
8UIW|1|N|U|55
8UIW|1|N|A|56
8UIW|1|N|G|57
8UIW|1|N|U|58
8UIW|1|N|C|59

Current chains

Chain N

yjdF RNA (R. gauvreauii)

Nearby chains