HL_8UIY_049

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8UIY|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_049 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.3911

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8UIY|1|L5|G|3757
8UIY|1|L5|U|3758
8UIY|1|L5|A|3759
8UIY|1|L5|A|3760
8UIY|1|L5|C|3761
8UIY|1|L5|U|3762
8UIY|1|L5|A|3763
8UIY|1|L5|U|3764
8UIY|1|L5|G|3765
8UIY|1|L5|A|3766
8UIY|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA