HL_8UJ9_039

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_039 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3289

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8UJ9|1|L5|G|2664
8UJ9|1|L5|U|2665
8UJ9|1|L5|U|2666
8UJ9|1|L5|C|2667
8UJ9|1|L5|G|2668
8UJ9|1|L5|C|2669
8UJ9|1|L5|C|2670

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a