3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GUAACUAUGAC
Length
11 nucleotides
Bulged bases
8UJ9|1|L5|A|3760
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_049 not in the Motif Atlas
Homologous match to HL_8CRE_047
Geometric discrepancy: 0.3964
The information below is about HL_8CRE_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

8UJ9|1|L5|G|3757
8UJ9|1|L5|U|3758
8UJ9|1|L5|A|3759
8UJ9|1|L5|A|3760
8UJ9|1|L5|C|3761
8UJ9|1|L5|U|3762
8UJ9|1|L5|A|3763
8UJ9|1|L5|U|3764
8UJ9|1|L5|G|3765
8UJ9|1|L5|A|3766
8UJ9|1|L5|C|3767

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain Pt
Transfer RNA; tRNA
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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