HL_8UJB_007

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8UJB|1|L5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_007 not in the Motif Atlas

Homologous match to HL_8CRE_007

Geometric discrepancy: 0.4013

The information below is about HL_8CRE_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8UJB|1|L5|G|230
8UJB|1|L5|U|231
8UJB|1|L5|G|232
8UJB|1|L5|U|233
8UJB|1|L5|G|234
8UJB|1|L5|A|235
8UJB|1|L5|G|236
8UJB|1|L5|G|237
8UJB|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26