HL_8UJB_053

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8UJB|1|L5|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_053 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.3529

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8UJB|1|L5|G|3757
8UJB|1|L5|U|3758
8UJB|1|L5|A|3759
8UJB|1|L5|A|3760
8UJB|1|L5|C|3761
8UJB|1|L5|U|3762
8UJB|1|L5|A|3763
8UJB|1|L5|U|3764
8UJB|1|L5|G|3765
8UJB|1|L5|A|3766
8UJB|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA