HL_8UJD_049

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8UJD|1|L5|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_049 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.3673

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8UJD|1|L5|G|3757
8UJD|1|L5|U|3758
8UJD|1|L5|A|3759
8UJD|1|L5|A|3760
8UJD|1|L5|C|3761
8UJD|1|L5|U|3762
8UJD|1|L5|A|3763
8UJD|1|L5|U|3764
8UJD|1|L5|G|3765
8UJD|1|L5|A|3766
8UJD|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains