HL_8UJD_063

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8UJD|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_063 not in the Motif Atlas

Homologous match to HL_8CRE_061

Geometric discrepancy: 0.0756

The information below is about HL_8CRE_061

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8UJD|1|L5|A|4474
8UJD|1|L5|G|4475
8UJD|1|L5|C|4476
8UJD|1|L5|A|4477
8UJD|1|L5|G|4478
8UJD|1|L5|A|4479
8UJD|1|L5|A|4480
8UJD|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40