HL_8UJJ_003
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJJ_003 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.2662
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8UJJ|1|At|G|53
8UJJ|1|At|U|54
8UJJ|1|At|U|55
8UJJ|1|At|C|56
8UJJ|1|At|G|57
8UJJ|1|At|A|58
8UJJ|1|At|A|59
8UJJ|1|At|A|60
8UJJ|1|At|C|61
Current chains
- Chain At
- A site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Ribosomal protein uL16-like
Coloring options: