HL_8UJJ_052
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8UJJ|1|L5|A|3760
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJJ_052 not in the Motif Atlas
- Homologous match to HL_8CRE_047
- Geometric discrepancy: 0.3523
- The information below is about HL_8CRE_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8UJJ|1|L5|G|3757
8UJJ|1|L5|U|3758
8UJJ|1|L5|A|3759
8UJJ|1|L5|A|3760
8UJJ|1|L5|C|3761
8UJJ|1|L5|U|3762
8UJJ|1|L5|A|3763
8UJJ|1|L5|U|3764
8UJJ|1|L5|G|3765
8UJJ|1|L5|A|3766
8UJJ|1|L5|C|3767
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain At
- Transfer RNA; tRNA
- Chain Pt
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: