HL_8UJJ_066

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8UJJ|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_066 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.122

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8UJJ|1|L5|A|4474
8UJJ|1|L5|G|4475
8UJJ|1|L5|C|4476
8UJJ|1|L5|A|4477
8UJJ|1|L5|G|4478
8UJJ|1|L5|A|4479
8UJJ|1|L5|A|4480
8UJJ|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40