HL_8UJK_049

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8UJK|1|L5|A|3642, 8UJK|1|L5|A|3643, 8UJK|1|L5|U|3644, 8UJK|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_049 not in the Motif Atlas

Homologous match to HL_8P9A_157

Geometric discrepancy: 0.1411

The information below is about HL_8P9A_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UJK|1|L5|U|3639
8UJK|1|L5|U|3640
8UJK|1|L5|U|3641
8UJK|1|L5|A|3642
8UJK|1|L5|A|3643
8UJK|1|L5|U|3644
8UJK|1|L5|U|3645
8UJK|1|L5|A|3646
8UJK|1|L5|A|3647
8UJK|1|L5|A|3648
8UJK|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37