HL_8UJK_054

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8UJK|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_054 not in the Motif Atlas

Homologous match to HL_8CRE_048

Geometric discrepancy: 0.116

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UJK|1|L5|U|3796
8UJK|1|L5|C|3797
8UJK|1|L5|U|3798
8UJK|1|L5|A|3799
8UJK|1|L5|A|3800
8UJK|1|L5|U|3801
8UJK|1|L5|U|3802
8UJK|1|L5|A|3803
8UJK|1|L5|G|3804

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA