HL_8UJK_066
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8UJK|1|L5|G|4475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJK_066 not in the Motif Atlas
- Homologous match to HL_8CRE_061
- Geometric discrepancy: 0.093
- The information below is about HL_8CRE_061
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
8UJK|1|L5|A|4474
8UJK|1|L5|G|4475
8UJK|1|L5|C|4476
8UJK|1|L5|A|4477
8UJK|1|L5|G|4478
8UJK|1|L5|A|4479
8UJK|1|L5|A|4480
8UJK|1|L5|U|4481
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain Lm
- Large ribosomal subunit protein eL40
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