HL_8UKB_023

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8UKB|1|L5|U|1596, 8UKB|1|L5|A|1600, 8UKB|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_023 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.1015

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

8UKB|1|L5|A|1593
8UKB|1|L5|C|1594
8UKB|1|L5|G|1595
8UKB|1|L5|U|1596
8UKB|1|L5|G|1597
8UKB|1|L5|C|1598
8UKB|1|L5|A|1599
8UKB|1|L5|A|1600
8UKB|1|L5|A|1601
8UKB|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37