HL_8UKB_051

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8UKB|1|L5|A|3642, 8UKB|1|L5|A|3643, 8UKB|1|L5|U|3644, 8UKB|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_051 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1166

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8UKB|1|L5|U|3639
8UKB|1|L5|U|3640
8UKB|1|L5|U|3641
8UKB|1|L5|A|3642
8UKB|1|L5|A|3643
8UKB|1|L5|U|3644
8UKB|1|L5|U|3645
8UKB|1|L5|A|3646
8UKB|1|L5|A|3647
8UKB|1|L5|A|3648
8UKB|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37