HL_8UKB_069

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8UKB|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_069 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0741

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8UKB|1|L5|A|4474
8UKB|1|L5|G|4475
8UKB|1|L5|C|4476
8UKB|1|L5|A|4477
8UKB|1|L5|G|4478
8UKB|1|L5|A|4479
8UKB|1|L5|A|4480
8UKB|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40