HL_8UKB_101

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8UKB|1|S2|G|821, 8UKB|1|S2|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_101 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.2348

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UKB|1|S2|U|820
8UKB|1|S2|G|821
8UKB|1|S2|U|822
8UKB|1|S2|U|823
8UKB|1|S2|C|824
8UKB|1|S2|A|825
8UKB|1|S2|A|826
8UKB|1|S2|A|827
8UKB|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24