HL_8UKB_104

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_104 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.1607

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8UKB|1|S2|A|957
8UKB|1|S2|G|958
8UKB|1|S2|G|959
8UKB|1|S2|U|960
8UKB|1|S2|G|961
8UKB|1|S2|A|962
8UKB|1|S2|A|963
8UKB|1|S2|A|964
8UKB|1|S2|U|965
8UKB|1|S2|U|966

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SO

Small ribosomal subunit protein uS11