HL_8UPO_001

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

8UPO|1|A|C|16, 8UPO|1|A|C|17, 8UPO|1|A|G|18, 8UPO|1|A|G|19, 8UPO|1|A|U|20, 8UPO|1|A|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_001 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2642

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8UPO|1|A|C|13
8UPO|1|A|A|14
8UPO|1|A|G|15
8UPO|1|A|C|16
8UPO|1|A|C|17
8UPO|1|A|G|18
8UPO|1|A|G|19
8UPO|1|A|U|20
8UPO|1|A|A|21
8UPO|1|A|G|22

Current chains

Chain A

E-site and P-site tRNA (fMet)

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA