HL_8UPO_014

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_014 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0775

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8UPO|1|D|A|320
8UPO|1|D|A|321
8UPO|1|D|C|322
8UPO|1|D|U|323
8UPO|1|D|G|324
8UPO|1|D|A|325
8UPO|1|D|G|326
8UPO|1|D|A|327
8UPO|1|D|C|328
8UPO|1|D|A|329
8UPO|1|D|C|330
8UPO|1|D|G|331
8UPO|1|D|G|332
8UPO|1|D|U|333

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16