HL_8UPO_053

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8UPO|1|a|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_053 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0778

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UPO|1|a|C|487
8UPO|1|a|G|488
8UPO|1|a|G|489
8UPO|1|a|C|490
8UPO|1|a|G|491
8UPO|1|a|A|492
8UPO|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22