HL_8UPO_092

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8UPO|1|a|A|2268, 8UPO|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_092 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0733

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8UPO|1|a|C|2264
8UPO|1|a|U|2265
8UPO|1|a|A|2266
8UPO|1|a|A|2267
8UPO|1|a|A|2268
8UPO|1|a|G|2269
8UPO|1|a|A|2270
8UPO|1|a|G|2271
8UPO|1|a|U|2272
8UPO|1|a|A|2273
8UPO|1|a|A|2274
8UPO|1|a|C|2275
8UPO|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16