HL_8UPR_049
3D structure
- PDB id
- 8UPR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8UPR|1|a|G|329, 8UPR|1|a|A|330, 8UPR|1|a|C|331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UPR_049 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.0968
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
8UPR|1|a|G|327
8UPR|1|a|U|328
8UPR|1|a|G|329
8UPR|1|a|A|330
8UPR|1|a|C|331
8UPR|1|a|A|332
8UPR|1|a|G|333
8UPR|1|a|C|334
8UPR|1|a|C|335
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L24
- Chain l
- 50S ribosomal protein L4
Coloring options: