HL_8UQL_050

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8UQL|1|a|G|386, 8UQL|1|a|G|389

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQL_050 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0897

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8UQL|1|a|A|382
8UQL|1|a|C|383
8UQL|1|a|A|384
8UQL|1|a|C|385
8UQL|1|a|G|386
8UQL|1|a|U|387
8UQL|1|a|G|388
8UQL|1|a|G|389
8UQL|1|a|U|390
8UQL|1|a|A|391
8UQL|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28