HL_8URI_004
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CAGCCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8URI|1|B|C|16, 8URI|1|B|C|17, 8URI|1|B|G|18, 8URI|1|B|G|19, 8URI|1|B|U|20, 8URI|1|B|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8URI_004 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.2646
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81100.2
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
8URI|1|B|C|13
8URI|1|B|A|14
8URI|1|B|G|15
8URI|1|B|C|16
8URI|1|B|C|17
8URI|1|B|G|18
8URI|1|B|G|19
8URI|1|B|U|20
8URI|1|B|A|21
8URI|1|B|G|22
Current chains
- Chain B
- E-site and P-site fMet-tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: