HL_8URI_019

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URI_019 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1965

The information below is about HL_2ZZN_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8URI|1|D|G|521
8URI|1|D|C|522
8URI|1|D|A|523
8URI|1|D|G|524
8URI|1|D|C|525
8URI|1|D|C|526
8URI|1|D|C|528

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12