HL_8URI_066

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

8URI|1|a|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URI_066 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3834

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8URI|1|a|U|1065
8URI|1|a|U|1066
8URI|1|a|A|1067
8URI|1|a|G|1068
8URI|1|a|A|1069
8URI|1|a|A|1070
8URI|1|a|G|1071
8URI|1|a|C|1072
8URI|1|a|A|1073

Current chains

Chain a

23S rRNA

Nearby chains