HL_8URI_067

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URI_067 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1931

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8URI|1|a|C|1092
8URI|1|a|G|1093
8URI|1|a|U|1094
8URI|1|a|A|1095
8URI|1|a|A|1096
8URI|1|a|U|1097
8URI|1|a|A|1098
8URI|1|a|G|1099

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36