HL_8URI_095

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URI_095 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0842

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8URI|1|a|U|2356
8URI|1|a|G|2357
8URI|1|a|A|2358
8URI|1|a|C|2359
8URI|1|a|G|2360
8URI|1|a|G|2361

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15