HL_8URI_097

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8URI|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URI_097 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0657

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8URI|1|a|U|2404
8URI|1|a|G|2405
8URI|1|a|A|2406
8URI|1|a|A|2407
8URI|1|a|U|2408
8URI|1|a|G|2409
8URI|1|a|G|2410
8URI|1|a|A|2411
8URI|1|a|A|2412
8URI|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15