HL_8URI_099

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

8URI|1|a|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URI_099 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0889

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8URI|1|a|U|2528
8URI|1|a|G|2529
8URI|1|a|A|2530
8URI|1|a|A|2531
8URI|1|a|G|2532
8URI|1|a|U|2533
8URI|1|a|A|2534
8URI|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36