3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
G(PSU)AACUA(PSU)AAC
Length
11 nucleotides
Bulged bases
8URM|1|1|A|1913
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8URM_048 not in the Motif Atlas
Geometric match to HL_8CRE_047
Geometric discrepancy: 0.1359
The information below is about HL_8CRE_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

8URM|1|1|G|1910
8URM|1|1|PSU|1911
8URM|1|1|A|1912
8URM|1|1|A|1913
8URM|1|1|C|1914
8URM|1|1|U|1915
8URM|1|1|A|1916
8URM|1|1|PSU|1917
8URM|1|1|A|1918
8URM|1|1|A|1919
8URM|1|1|C|1920

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 4
mRNA
Chain 5
Transfer RNA; tRNA
Chain 6
Transfer RNA; tRNA

Coloring options:


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