HL_8URX_012

3D structure

PDB id

8URX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8URX|1|D|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URX_012 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1133

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8URX|1|D|G|259
8URX|1|D|G|260
8URX|1|D|U|261
8URX|1|D|A|262
8URX|1|D|A|263
8URX|1|D|C|264
8URX|1|D|G|265
8URX|1|D|G|266
8URX|1|D|C|267

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain V

30S ribosomal protein S17