HL_8URY_027

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAACGC

Length

8 nucleotides

Bulged bases

8URY|1|D|A|968, 8URY|1|D|G|971

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URY_027 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1724

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8URY|1|D|G|963
8URY|1|D|A|964
8URY|1|D|U|965
8URY|1|D|A|968
8URY|1|D|A|969
8URY|1|D|C|970
8URY|1|D|G|971
8URY|1|D|C|972

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S9

Chain P

Small ribosomal subunit protein uS10