3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CAAUUUAUACAG
Length
12 nucleotides
Bulged bases
8UT0|1|2|U|74, 8UT0|1|2|U|77
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_002 not in the Motif Atlas
Geometric match to HL_8H9D_001
Geometric discrepancy: 0.122
The information below is about HL_8H9D_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.1
Basepair signature
cWW-F
Number of instances in this motif group
8

Unit IDs

8UT0|1|2|C|70
8UT0|1|2|A|71
8UT0|1|2|A|72
8UT0|1|2|U|73
8UT0|1|2|U|74
8UT0|1|2|U|75
8UT0|1|2|A|76
8UT0|1|2|U|77
8UT0|1|2|A|78
8UT0|1|2|C|79
8UT0|1|2|A|80
8UT0|1|2|G|81

Current chains

Chain 2
18S rRNA

Nearby chains

Chain ST
40S ribosomal protein S6-A

Coloring options:


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