HL_8UT0_028

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8UT0|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_028 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.141

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8UT0|1|2|C|1309
8UT0|1|2|U|1310
8UT0|1|2|U|1311
8UT0|1|2|A|1312
8UT0|1|2|A|1313
8UT0|1|2|U|1314
8UT0|1|2|U|1315
8UT0|1|2|G|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S17-B