HL_8UT0_029

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

8UT0|1|2|U|1361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_029 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2328

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8UT0|1|2|C|1359
8UT0|1|2|A|1360
8UT0|1|2|U|1361
8UT0|1|2|U|1362
8UT0|1|2|U|1363
8UT0|1|2|G|1364

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S5

Chain SF

40S ribosomal protein S16-A

Chain SI

40S ribosomal protein S19-A