HL_8UT0_067
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 8UT0|1|A|G|1507, 8UT0|1|A|U|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UT0_067 not in the Motif Atlas
- Homologous match to HL_8C3A_032
- Geometric discrepancy: 0.161
- The information below is about HL_8C3A_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8UT0|1|A|A|1506
8UT0|1|A|G|1507
8UT0|1|A|C|1508
8UT0|1|A|A|1509
8UT0|1|A|G|1510
8UT0|1|A|U|1511
8UT0|1|A|U|1512
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L17-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Ln
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)
Coloring options: