HL_8UTI_040
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8UTI|1|A|A|2138, 8UTI|1|A|A|2139, 8UTI|1|A|U|2140, 8UTI|1|A|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UTI_040 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.0765
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8UTI|1|A|U|2135
8UTI|1|A|C|2136
8UTI|1|A|U|2137
8UTI|1|A|A|2138
8UTI|1|A|A|2139
8UTI|1|A|U|2140
8UTI|1|A|U|2141
8UTI|1|A|A|2142
8UTI|1|A|A|2143
8UTI|1|A|A|2144
8UTI|1|A|A|2145
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)
Coloring options: