HL_8UTJ_103
3D structure
- PDB id
- 8UTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8UTJ|1|5|C|16, 8UTJ|1|5|G|18, 8UTJ|1|5|G|19, 8UTJ|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UTJ_103 not in the Motif Atlas
- Geometric match to HL_5E81_211
- Geometric discrepancy: 0.3042
- The information below is about HL_5E81_211
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8UTJ|1|5|C|13
8UTJ|1|5|A|14
8UTJ|1|5|G|15
8UTJ|1|5|C|16
8UTJ|1|5|C|17
8UTJ|1|5|U|17|||A
8UTJ|1|5|G|18
8UTJ|1|5|G|19
8UTJ|1|5|U|20
8UTJ|1|5|A|21
8UTJ|1|5|G|22
Current chains
- Chain 5
- Lys-tRNA^proL
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
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