HL_8UU4_005

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAUACAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1398

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8UU4|1|A|U|159
8UU4|1|A|G|160
8UU4|1|A|A|161
8UU4|1|A|A|162
8UU4|1|A|U|163
8UU4|1|A|A|164
8UU4|1|A|C|165
8UU4|1|A|A|166
8UU4|1|A|U|167
8UU4|1|A|A|168
8UU4|1|A|G|169

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28