HL_8UU4_013

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

8UU4|1|A|G|432, 8UU4|1|A|A|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0961

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8UU4|1|A|A|428
8UU4|1|A|C|429
8UU4|1|A|A|430
8UU4|1|A|C|431
8UU4|1|A|G|432
8UU4|1|A|U|433
8UU4|1|A|G|434
8UU4|1|A|A|435
8UU4|1|A|A|436
8UU4|1|A|A|437
8UU4|1|A|U|438

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28