HL_8UU4_040

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8UU4|1|A|A|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1341

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UU4|1|A|A|1679
8UU4|1|A|G|1680
8UU4|1|A|A|1681
8UU4|1|A|G|1682
8UU4|1|A|A|1683
8UU4|1|A|A|1684
8UU4|1|A|U|1685

Current chains

Chain A

23S Ribosomal RNA

Nearby chains