HL_8UU5_005

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAUACAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.136

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8UU5|1|A|U|159
8UU5|1|A|G|160
8UU5|1|A|A|161
8UU5|1|A|A|162
8UU5|1|A|U|163
8UU5|1|A|A|164
8UU5|1|A|C|165
8UU5|1|A|A|166
8UU5|1|A|U|167
8UU5|1|A|A|168
8UU5|1|A|G|169

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28