HL_8UU5_013

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

8UU5|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0893

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8UU5|1|A|A|428
8UU5|1|A|C|429
8UU5|1|A|A|430
8UU5|1|A|C|431
8UU5|1|A|G|432
8UU5|1|A|U|433
8UU5|1|A|G|434
8UU5|1|A|A|435
8UU5|1|A|A|436
8UU5|1|A|A|437
8UU5|1|A|U|438

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28

Chain x

Transfer RNA; tRNA