HL_8UU5_024

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGAAAUUC

Length

9 nucleotides

Bulged bases

8UU5|1|A|A|827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_024 not in the Motif Atlas

Geometric match to HL_8C3A_021

Geometric discrepancy: 0.1471

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UU5|1|A|G|824
8UU5|1|A|A|825
8UU5|1|A|G|826
8UU5|1|A|A|827
8UU5|1|A|A|828
8UU5|1|A|A|829
8UU5|1|A|U|830
8UU5|1|A|U|831
8UU5|1|A|C|832

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2